• ADIT: PDB Deposition
• ADIT-NMR

• Search PDB (PDBj Mine)
• wwPDB/RDF
• Latest Release Search
• Sequence-Navigator
• Structure-Navigator
• SeSAW
• Ligand Binding Sites (GIRAF)
• EM Navigator
• Search NMR Data (BMRB)
• Status Search

• jV: Graphic Viewer
• Yorodumi
• Protein Globe
• ASH
• MAFFTash
• SEALA
• NMRToolBox

• CRNPRED
• Spanner
• SFAS

• eF-site/eF-seek/eF-surf
• ProMode Elastic

• eProtS
• Molecule of the Month
• Previous Workshop

• PDB Archive/Snapshot Archive

PDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU. PDBj is supported by JST-NBDC and Osaka University.

Summary [1hxy]

About PDBj Mine Update Information

PDB ID or Keywordsequenceauthor nameEMDB ID

---

<Asymmetric unit> = <Biological unit> More images... View in 3D molecule viewer ( jV4 / Jmol ) *1

PDB ID 1hxy  sequence information (FASTA format)    RELATED PDB ID 1enf, 1dlh, 1ewz Descriptor HLA CLASS II HISTOCOMPATIBILITY ANTIGEN (DR ALPHA CHAIN, DR-1 BETA CHAIN), HEMAGGLUTININ, ENTEROTOXIN H Title CRYSTAL STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN H IN COMPLEX WITH HUMAN MHC CLASS II Functional Keywords complex, IMMUNE SYSTEM-TOXIN COMPLEX IMMUNE SYSTEM/TOXIN Biological source Homo sapiens (human) ,Staphylococcus aureus (the details in Structural Details Page) Cellular location [UNP - P01903] Cell membrane; Single-pass type I membrane protein [UNP - P0A0M0] Secreted Organ source [UNP - P01903] Blood, and Colon [UNP - P01903] B-cell [UNP - P01903] Blood [UNP - P01903] Liver [UNP - P04229] Cerebellum Total number of polymer chains 4 Total molecular weight 69502.9 (the details in Structural Details Page) Authors Petersson, K. , Hakansson, M. , Nilsson, H. , Forsberg, G. , Svensson, L.A. , Liljas, A. , Walse, B. (deposition date : 2001-01-17, release date : 2001-06-27, last modified : 2009-02-24) Primary citation Petersson, K. , Hakansson, M. , Nilsson, H. , Forsberg, G. , Svensson, L.A. , Liljas, A. , Walse, B. Crystal Structure of a Superantigen Bound to MHC Class II Displays Zinc and Peptide Dependence Embo J., 20:3306 - 3312, 2001.(PubMed : 11432818)  (DOI: 10.1093/emboj/20.13.3306) Experimental method X-RAY DIFFRACTION ( 2.6[Å] ) Other Database Information EM Navigator , Yorodumi , CATH , FSSP , SCOP , VAST , UniProt ( P01903, P04229, P0A0M0 ) , GenBank/DDBJ/EMBL (GB - 6470273) , eF-site , GDB , ProTherm , EzCatDB , PISA , PQS , wwPDB/RDF

Electron density map is available to be displayed.

---

*1) jV4 and Jmol require Java(TM)Plug-in 1.5 or later.
     Currently, you can't browse web pages which include jV applets in some version of Mac OS X. See here for more details.