• ADIT: PDB Deposition
• ADIT-NMR

• Search PDB (PDBj Mine)
• wwPDB/RDF
• Latest Release Search
• Sequence-Navigator
• Structure-Navigator
• SeSAW
• Ligand Binding Sites (GIRAF)
• EM Navigator
• Search NMR Data (BMRB)
• Status Search

• jV: Graphic Viewer
• Yorodumi
• Protein Globe
• ASH
• MAFFTash
• SEALA
• NMRToolBox

• CRNPRED
• Spanner
• SFAS

• eF-site/eF-seek/eF-surf
• ProMode Elastic

• eProtS
• Molecule of the Month
• Previous Workshop

• PDB Archive/Snapshot Archive

PDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU. PDBj is supported by JST-NBDC and Osaka University.

Summary [1u5s]

About PDBj Mine Update Information

PDB ID or Keywordsequenceauthor nameEMDB ID

---

<Asymmetric unit> = <Biological unit> More images... View in 3D molecule viewer ( jV4 / Jmol ) *1

PDB ID 1u5s  sequence information (FASTA format)    Descriptor Cytoplasmic protein NCK2, PINCH protein Title NMR structure of the complex between Nck-2 SH3 domain and PINCH-1 LIM4 domain Functional Keywords Protein-protein complex, beta barrel, beta sheet, zinc finger, METAL BINDING PROTEIN Biological source Homo sapiens (human) Cellular location [UNP - O43639] Cytoplasm [UNP - P48059] Cell junction, focal adhesion Organ source [UNP - O43639] Lung [UNP - O43639] Placenta, and Uterus [UNP - O43639] Platelet [UNP - O43639] Leukemic T-cell [UNP - P48059] Fetal liver [UNP - P48059] Bone marrow [UNP - P48059] Renal cell carcinoma Total number of polymer chains 2 Total molecular weight 15726.7 (the details in Structural Details Page) Authors Vaynberg, J. , Fukuda, T. , Vinogradova, O. , Velyvis, A. , Ng, L. , Wu, C. , Qin, J. (deposition date : 2004-07-28, release date : 2005-04-05, last modified : 2009-02-24) Primary citation Vaynberg, J. , Fukuda, T. , Chen, K. , Vinogradova, O. , Velyvis, A. , Tu, Y. , Ng, L. , Wu, C. , Qin, J. Structure of an ultraweak protein-protein complex and its crucial role in regulation of cell morphology and motility. Mol.Cell, 17:513 - 523, 2005.(PubMed : 15721255)  (DOI: 10.1016/j.molcel.2004.12.031) Experimental method SOLUTION NMR Other Database Information EM Navigator , Yorodumi , CATH , FSSP , SCOP , VAST , UniProt ( O43639, P48059 ) , eF-site , GDB , ProTherm , EzCatDB , PISA , PQS , NRG-CING , wwPDB/RDF

Electron density map is available to be displayed.

---

*1) jV4 and Jmol require Java(TM)Plug-in 1.5 or later.
     Currently, you can't browse web pages which include jV applets in some version of Mac OS X. See here for more details.