EnglishJapanese Previous Workshop Statistics Help FAQ Contact Us
Educational service >>
Download >>

PDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU. PDBj is supported by JST-NBDC and Osaka University.

Summary Structural Experimental Function Sequence Neighbor Download Link


<Asymmetric unit>
= <Biological unit>
3pdo.jpg
More images...
View in 3D molecule viewer
( jV4 / Jmol ) *1
PDB ID3pdo  sequence information (FASTA format)   
RELATED PDB ID3pgc, 3pgd
DescriptorHLA class II histocompatibility antigen, DR alpha chain, HLA class II histocompatibility antigen, DRB1-1 beta chain, HLA class II histocompatibility antigen gamma chain
TitleCrystal Structure of HLA-DR1 with CLIP102-120
Functional KeywordsMHC class II, MHC II, self antigen, invariant chain, CLIP, immune system
IMMUNE SYSTEM
Biological sourceHomo sapiens (human)
Cellular location [UNP - P01903] Cell membrane; Single-pass type I membrane protein
[UNP - P04233] Cell membrane; Single-pass type II membrane protein (Potential)
Organ source [UNP - P01903] Blood, and Colon
[UNP - P01903] B-cell
[UNP - P01903] Blood
[UNP - P01903] Liver
[UNP - P04229] Cerebellum
[UNP - P04233] Heart, and Synovium
[UNP - P04233] B-cell, and Tonsil
[UNP - P04233] B-cell lymphoma
Total number of polymer chains3
Total molecular weight47818.4 (the details in Structural Details Page)
AuthorsGunther, S. , Schlundt, A. , Sticht, J. , Roske, Y. , Heinemann, U. , Wiesmuller, K.-H. , Jung, G. , Falk, K. , Rotzschke, O. , Freund, C. (deposition date : 2010-10-23, release date : 2010-12-08, last modified : 2011-01-05)
Primary citationGunther, S. , Schlundt, A. , Sticht, J. , Roske, Y. , Heinemann, U. , Wiesmuller, K.H. , Jung, G. , Falk, K. , Rotzschke, O. , Freund, C.
Bidirectional binding of invariant chain peptides to an MHC class II molecule.
Proc.Natl.Acad.Sci.USA, 107:22219 - 22224, 2010.(PubMed : 21115828)  (DOI: 10.1073/pnas.1014708107)
Experimental methodX-RAY DIFFRACTION ( 1.9500[Å] )
Other Database Information
Yorodumi , CATH , FSSP , SCOP , VAST , UniProt ( P01903, P04229, P04233 ) , eF-site , PISA , wwPDB/RDF



*1) jV4 and Jmol require Java(TM)Plug-in 1.5 or later.
     Currently, you can't browse web pages which include jV applets in some version of Mac OS X. See here for more details.