137043
entries available
on 2018-1-17
00:00 UTC / 09:00 JST
Summary Structural Experimental Function Sequence Neighbor History Download Link

Mine: 4genCrystal structure of Zucchini (monomer)

RELATED PDB ID4gel, 4gem
DescriptorMitochondrial cardiolipin hydrolase, CHLORIDE ION (3 entities in total)
Functional KeywordspiRNA, Phospholipase D, Nuclease, HYDROLASE
Biological sourceDrosophila melanogaster (Fruit fly)
Cellular location [UNP - Q9VKD7] Mitochondrion outer membrane ; Single-pass membrane protein
Organ source [UNP - Q9VKD7] Embryo
Total number of polymer chains1
Total molecular weight19384.1 (the details in Structural Details Page)
AuthorsNishimasu, H. , Fukuhara, S. , Ishitani, R. , Nureki, O. (deposition date : 2012-08-02, release date : 2012-10-17, last modified : 2017-11-15)
Primary citationNishimasu, H. , Ishizu, H. , Saito, K. , Fukuhara, S. , Kamatani, M.K. , Bonnefond, L. , Matsumoto, N. , Nishizawa, T. , Nakanaga, K. , Aoki, J. , Ishitani, R. , Siomi, H. , Siomi, M.C. , Nureki, O.
Structure and function of Zucchini endoribonuclease in piRNA biogenesis
Nature, 491:284 - 287, 2012.
PubMed : 23064230 (PDB entries with the same primary citation) , DOI: 10.1038/nature11509
Experimental methodX-RAY DIFFRACTION ( 2.2000[Å] )
Other Database Information
Yorodumi , CATH , FSSP , SCOP , VAST , UniProt ( Q9VKD7 ) , eF-site , KEGG ( EC 3.1.4.- ) , PISA , wwPDB/RDF , Pfam ( PF13091 )
Validation Report4gen_svg.jpg
<Asymmetric unit>
= <Biological unit>
4gen.png
More images... *1
View in 3D molecule viewer
( jV4 / Jmol ) *2 , JSmol
Downloads
PDB format
FASTA sequence
PDBx/mmCIF format
(More format ...)


*1)The images were created using 'Molmil'. Molmil's coarse surface was inspired by UCSF Chimera's Multiscale model.
     Software extensions to UCSF chimera for interactive visualization of large molecular assemblies.
     Goddard, T.D. et al., Structure 13: 473-482 (2005) [doi:10.1016/j.str.2005.01.006]

        


Copyright © 2007 Protein Data Bank Japan