134436
entries available
on 2017-10-18
00:00 UTC / 09:00 JST
Summary Structural Experimental Function Sequence Neighbor Download Link

Mine: 5ax0Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.52 angstrom
replaces: '3wt9'

RELATED PDB ID5awz, 5ax1
DescriptorRhodopsin I, RETINAL, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate,... (8 entities in total)
Functional KeywordsPROTON TRANSPORT, MEMBRANE PROTEIN, RETINAL, WATER CLUSTER, GREEN ALGAE, PHOTOTAXIS, CELL-FREE SYNTHESIS, MICROBIAL-TYPE RHODOPSIN, LIGHT-DRIVEN PROTON PUMP
Biological sourceAcetabularia acetabulum (Mermaid's wine glass)
Total number of polymer chains1
Total molecular weight28880.2 (the details in Structural Details Page)
AuthorsFuruse, M. , Hosaka, T. , Kimura-Someya, T. , Yokoyama, S. , Shirouzu, M. (deposition date : 2015-07-10, release date : 2015-08-26, last modified : 2015-11-18)
Primary citationFuruse, M. , Tamogami, J. , Hosaka, T. , Kikukawa, T. , Shinya, N. , Hato, M. , Ohsawa, N. , Kim, S.Y. , Jung, K.H. , Demura, M. , Miyauchi, S. , Kamo, N. , Shimono, K. , Kimura-Someya, T. , Yokoyama, S. , Shirouzu, M.
Structural basis for the slow photocycle and late proton release in Acetabularia rhodopsin I from the marine plant Acetabularia acetabulum
Acta Crystallogr.,Sect.D, 71:2203 - 2216, 2015.
PubMed : 26527138 (PDB entries with the same primary citation) , DOI: 10.1107/S1399004715015722
Experimental methodX-RAY DIFFRACTION ( 1.521[Å] )
Other Database Information
Yorodumi , CATH , FSSP , SCOP , VAST , UniProt ( G3CEP6 ) , eF-site , PISA , wwPDB/RDF , Pfam ( PF01036 )
Validation Report5ax0_svg.jpg
<Asymmetric unit>
= <Biological unit>
5ax0.png
More images... *1
View in 3D molecule viewer
( jV4 / Jmol ) *2 , JSmol
Downloads
PDB format
FASTA sequence
PDBx/mmCIF format
(More format ...)


*1)The images were created using 'Molmil'. Molmil's coarse surface was inspired by UCSF Chimera's Multiscale model.
     Software extensions to UCSF chimera for interactive visualization of large molecular assemblies.
     Goddard, T.D. et al., Structure 13: 473-482 (2005) [doi:10.1016/j.str.2005.01.006]

        


Copyright © 2007 Protein Data Bank Japan