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PDBj (Protein Data Bank Japan) maintains a centralized archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU. PDBj is supported by JST-BIRD.

xPSSS xPSSS SOAP Service

PDBjSOAPServiceX (wsdl)

Soap method sample client programs for java / perl
xquery Client1.java (set XPath)
Usage: java Client1 "XPath"
sample1.pl (set XPath)
Usage: sample1.pl "XPath"
Client2.java (set pdbid)
Usage: java Client2 pdbid
sample2.pl (set pdbid)
Usage: sample2.pl pdbid
txquery Client3.java (set xquery_file)
Usage: java Client3 xquery_file_name
xquery sample file1
sample3.pl (set xquery_file)
Usage: sample3.pl xquery_file_name
xquery sample file2
getapiversion
getserverapiversion
getserverversion
getserverecho
getservertime
isserveralive
getcollectionnames
getschemanames
getdoctypenames
getschema
Client4.java
Usage:java Client4 [options] (parameter...)
sample4.pl
Usage: sample4.pl [options] (parameter...)
options:
 0 : call method is getapiversion 
   return the version number of the Tamino Java API 
 1 : call method is getserverapiversion 
   return the version number of the server API of Tamino 
 2 : call method is getserverversion 
   return the server version of Tamino 
 3 : all method is getserverecho 
   return a server echo from the Tamino database 
 4 : call method is getservertime
   return the servertime at the Tamino database
 5 : call method is isserveralive 
   return whether the Tamino database is alive 
 6 : call method is getcollectionnames 
   return the TSD3 collection names in the Tamino database 
 7 : call method is getschmenames [parameter:(collectionname)] 
   return a string array with a list of the TSD3 schema names 
   in the Tamino database 
 8 : call method is getdoctypenames [parameter:(collectionname,schemaname)] 
   return a string array with a list of the TSD3 doctype names 
   in the Tamino database 
 9 : call method is getschema [parameter:(collectionname,schemaname)]
   return a specific schema from the Tamino database. 
   The method only returns TSD3 schemas 
    
The libraries required to access.(for Java)
  1. soap.jar (Apache SOAP 2.3.1)
  2. mail.jar
  3. activation.jar
  4. xercesImpl.jar
  5. xmlParserAPIs.jar
Please make sure that your CLASSPATH environment
variable has all above jar files and compile java sources.
The libraries required to access.(for Perl)
     - Perl Modules -
  1. SOAP::Lite
  2. MIME::Lite
  3. MIME::Parser
  4. IO::stringy
  5. Mail::Field
  6. Mail::Header ...